Some useful (free) sites for CADD:
Powerful Molecule Viewers
Ligand Binding Site Finder
Structure Based Molecule Design
Analytical softwares
Docking Softwares
Molecular Mechanics
- GROMACS
- NAMD
- TINKER
Protein Structure Modelling
- Modeller
SWISS-MODEL - Cation-Pi interaction Finder
- WhatIf Homology Modelling Web Server
- Protein Fold recognition at Phyre
- 1Dto3D prediction using HMMSTR/Rosetta
- MMMTree server
- Robetta Protein Server
Loop Modelling
Protein Electrostatics
Model Check/Verification
- Template/Protein Structure Check
- 2D Graphics check (incl. Ramachandran plots)
Small Compound Databases
Graphical Tools
This list is far from being complete. Should your tool be published here as well? Please notify us!